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Sunday, 24 April 2011

My Genes and Me

A few weeks ago Matt Ridley, the Rational (but possibly a bit over-) Optimist, wrote a blog entry condemning moves in the US to block people getting their genomes decoded. Apparently doctors over there feel that this should only be possible by going through them. There are actually strong arguments for this, as the field of Personal Genomics is still very immature, we don't understand a lot of what our DNA can tell us, and a little knowledge is a dangerous thing, particularly when placed in the hands of the health-conscious types who would go to the bother of having their genome sequenced. Nevertheless, I agreed with the thrust of his argument that it's our DNA, and we should be allowed to get it sequenced if we want to.

He was going to make a stand by getting his own DNA sequence through an American company called 23andMe, a name I've bumped into on several occasions in the last few months, in podcasts, blogs and articles. I had understood that the cost was still in the tens of thousands but, intrigued, I made my own way over to the site. Turns out that for just $199 + $60 postage I could get my genome sequenced. I couldn't resist, and ordered the testing kit. (And now I see they've reduced it to $99. Oh well, that's actually to my long term benefit, if it encourages more people to get it done.)

It arrived almost immediately, and I dutifully filled up a test tube with spit, put it into the courier pouch and sent it back. "Six to eight weeks", they said, but it was nearer three. I got the e-mail telling me the results were ready, and nervously logged into their website.

I should add at this point that they don't really sequence the whole 3 billion base pairs of your DNA: just stretches where there is useful knowledge to be gained. And even in these areas they're not looking at all possible deviations, just what are called Single Nucleotide Polymorphisms (SNPs), where a single base is altered. Despite this they have dozens of comparisons they can make, all rated according to the confidence you can have in the research behind them.

I looked at the Health Results first. These could have contained seriously bad news, but in fact there are only three conditions for which I have a substantially increased risk (other than ones where the base risk is really low to start with), and for all three there's nothing much you can do to avoid them that I wasn't already doing. The worst offender was prostrate cancer, for which a diet rich in tomatoes may be effective. Or may not. Either way, my food is going to look considerably redder from now on. I will also make sure that the doctor doesn't skip the prostrate check again when I have my annual health check up. (It may not be much fun for them, but then it's no picnic for me either.) On the plus side, they think I have a significantly reduced chance of developing Alzheimer's, which could be very useful if the retirement age keeps going up.

In the section about heritable conditions, it seems I am not a carrier for anything they can test. Good news for my son. In the section about traits they successfully managed to give me only a typical chance of having the two that I know for certain I do have. They said the same about the one medical condition I have, which does make me wonder a bit about how accurate the diagnoses are. However, part of the payment is a $5 a month subscription, so I can keep up to date with new medical advances.

Finally, I went to what turned out to be the most interesting section of all: my ancestry. They anonymously match you up with any close relatives who've also been tested, and you can make contact with any that want to be contacted. The nearest they found for me are (probable) fourth cousins, which means we share a common great-great-great-grandparent. That's quite a way back; however, as more and more people join 23andMe (no doubt tempted by the new low price), the chances of bumping into a closer relative increase accordingly.

Even more fascinating was the tracking of my paternal and maternal lines. On my father's side I seem to be descended from someone in Britain, Ireland or the Basque country. Sounds plausible enough. However, on my mother's side I can trace my line to a group made up principally of Ashkenazi Jews, Kurds and Druze. For geographical reasons I am inclined to rule out the Kurds and the Druze, so that means I am probably, and I have to admit unexpectedly, partly Jewish.

Strictly speaking, what it really means is that my mitochondria are Jewish, as they're what carry the DNA that is passed down from mother to daughter, and the mother to daughter line is only one of thousands of possible ways you can follow your family tree backwards, so the total Jewish part of my DNA might be very small. However, I find myself considerably amused by this: I was adopted as a baby, and because my birth mother was a Catholic I was entrusted to a (nominally) Catholic family. My adopted mother had converted to Catholicism when she married my father, but had been brought up a Lutheran. Her father though was partly Jewish. So all things come around.

Saturday, 16 April 2011

Next time, remember the shift key

Just bought an internet-enabled TV. We had to also buy a £75 (!!) wi-fi dongle to connect it to our router, and it didn't work. Very annoying, as a laptop, my smartphone, and a Nintendo 3DS had all connected effortlessly in recent weeks. The error report from the TV was quite basic: 'Failed'. It did at least confirm that it could see the dongle, and our router, but no indication of why it couldn't connect.

I went on to the web and googled "Sony Bravia wireless connection problem". Loads of people in the same boat, but no solutions, other than a couple of people for whom it had just started working eventually. One guy wanted me to go into my router and start setting DNS settings. I think not.

After half an hour of trying to set the TV's IP address manually, changing the wi-fi channel, and moving the router into the living room, I gave up for the night.

Today my 11 year old son has a go. He converts the letters in our SSID to uppercase, and suddenly the TV is on the net. I am more than a little bit miffed, and not because I've been outsmarted by someone four decades younger than me (I've grown used to that). Those letters in the SSID are hex digits, so it shouldn't matter if they're uppercase, lowercase or in bold italics. And if it does make a difference, why did the TV let us enter in lowercase in the first place? Am I missing something?

Anyway, that's behind us now. Tonight we will spend the evening watching YouTube videos from the comfort of our living room. Truly this is the Golden Age for nerds.

Sunday, 20 March 2011

BT decides it's not so good to talk after all

One of my other hats is Secretary to an Out of School Club. To save funds we decided to get rid of our BT land line and just use a cheap mobile phone on Pay as You Go. Our manager rang BT up to cancel our line, failed, and asked me if I'd have a go. "No problem", I confidently, and wrongly, answered.

First I rang the 0800 number on our bill. The automated answer system didn't have cancellations among its numerous options, so I aimed for the nearest one (getting new facilities on your line), and got straight through to an operator. He was not happy to speak to me about cancelling. We don't handle that here; you need to ring 0800 800 871. I did, and a polite voice thanked me for ringing BT but informed me that the number was no longer in use. I should ring 0800 800 152 instead.

Apart from the annoyance of being given a wrong number by someone whose job is to help BT customers (even outgoing ones?), would it have killed BT to automatically redirect me? I mean, they should have access to this advanced technology, what with them being a phone company.

By now realising why I had ended up with this job, I rang the new number. I had to negotiate with a voice recognition program, but we established that I wanted to cancel my line and I was put into a queue. Turned out they were 'exceptionally busy', but if I held on long enough, hell would eventually freeze over and someone would talk to me. I gave up after ten minutes.

The next day I tried again, this time having taken the precaution of emptying my bladder first in anticipation of a long wait. I was not to be disappointed. Twenty minutes this time, before the phone against my ear got so hot I gave up from the sheer discomfort. I really find it hard to imagine that there were so many people queuing that long in front of me; nobody at the other end sounded much more likely. I decided to ring again, but this time to request changing my direct debit details (from having one to not having one). The cursed automated system got the better of me: it wanted me to key in the new direct debit amount without reference to a human operator.

Back to the original sales number: two rings and I was through to a human being. Without giving him time to start his spiel, I told him my story of woe and begged for assistance. Now for the happy ending: although BT as a company seems to have little respect for its customers, its staff are made of better stuff. In a few minutes the cancellation was in progress, and I even had a ten digit reference number to take home.

Of course, it could all still go pair-shaped, sending me back to square one, and the overall experience has left a bad taste in my mouth. BT don't provide an address you can write to, their web site doesn't mention cancellations, and the phone number they provide for this doesn't seem to be staffed. You could almost imagine ...

Sunday, 27 February 2011

Biggles Flies Again

My son has just started reading a Biggles book. I used to collect the works of Capt W E Johns when I was roughly his age, but 'Biggles Defies the Swastika' is one of the few of those books that I can even vaguely remember. Biggles is in Norway in 1940 planning what aid Britain could provide in the event of a German invasion, when the Germans actually do invade, and he has to get out of the country posing as a Norwegian nazi. Quite how he hid his clipped British accent I forget.

I was surprised to see that the book was published in 1941, when it would have been extremely topical. In fact, given the lead times for publication, I wonder if Johns's narrative was as overtaken by events as was his hero. I would have read it nearer to 1970, when WW2 already seemed like distant history to me. And yet it was in fact no further in the past than the Falklands War is to me now, an event I can still remember in some detail. On the other hand, to my son the invasion of Norway is as far away as the Boer War was to me as a child.

His previous book was a Star Wars novel. Here we have a shared outlook, although he will never know the sense of wonder audiences experienced in 1977 when we first saw an SF film with decent special effects (pace 2001).

Stumbling Across My Mother

Last year I uploaded two photos of my maternal grandfather to this blog. I did it because, although he was slightly famous in his field, Google Image Search can't find a single photo of him.

It took a few weeks, but Google did eventually index the photos--but only for a few days. Since then a search for 'Georg Pniower' will bring up numerous images, including just about every other image on this blog of mine, even screen shots, but not those. I really have no idea of what algorithm Google uses that could exclude photos labelled 'Georg Pniower', while including one of me on the grounds that it lives in the same blog as a post mentioning Pniower.

I tried the search again last week. Still no photos of my grandfather, but imagine my surprise to see my mother, Renate, staring out at me, aged 12: a photo I'd never seen before.

Georg Pniower was half-Jewish, and when the Nazis came to power he and his family came under increasing threat of persecution. For safety he sent his daughter to a boarding school in Surrey set up for the children of refugees from Nazism. Stoatley Rough was a name I remember my mother mentioning often, though I don't think she ever visited it again, even though we only lived in Kent. Someone has created a web site about the school, with photos of the pupils, and so Google have included it in the results for 'Georg Pniower'.

Despite my grandfather's efforts to protect my mother, war broke out during the summer holidays in 1939 when she was back in Germany. Pniower thought twice about bringing her home, but the British Foreign Office reassured him that it would be safe. As we saw in Libya this week, competence is still something the FO aims for.

Saturday, 26 February 2011

08080 600832

This number has been ringing my mobile phone all week: twice a day sometimes. Twice I picked up the call, but both times I just heard office noises for a few seconds before being cut off. A Google search reveals fellow sufferers enjoying a similar experience, with a few getting to speak to a tele-salesperson.

Presumably whoever's responsible is auto-dialling several numbers at once so that they always have someone to speak to on the other end. However, when you're dialling mobile phones (or even a lot of non-mobiles), the recipient phone displays the incoming call's number. As it happens, I've added the number to my contacts under the name 'Spam' and I now refuse the calls. However, if I was prepared to answer the phone again and again until I finally spoke to a human being, I would by then be so hacked off by their cavalier approach that their chance of selling me anything would be zero.

And yet they keep doing this, so it must produce a return. I can only assume that there are people who will always answer the phone, no matter how obvious it should be that it's a waste of time. And maybe these are the same people who don't instinctively type the number into a search engine to see what comes up. Also this week, I got forwarded a hoax virus warning e-mail. The friend who forwarded it to me (and also to all the rest of their friends and acquaintances) suggested it might be a fake, but 'better safe than sorry'. It would have taken them ten seconds in Google to find out that it was a hoax dating back at least two years. Instead they propagated it to dozens more people, who all now have my e-mail address in their mail clients, as the BCC facility is also grossly under-utilised.

My son starts at secondary school in September, and I was pleased to note that the ICT course starts by teaching the children how to be safe on the internet. I sincerely hope that this includes a few common sense practices that will make the job of hoaxers and spammers a whole lot harder.

Sunday, 6 February 2011

A Farewell to Thunderbird

I have finally taken the plunge and abandoned using Thunderbird as my mail client. Running four different e-mail accounts, Thunderbird made it easy to download all my mail to one place, as well as allowing me to easily move messages between accounts, while the Lightning add-in did a fair job of handling my calendar. Unfortunately, Thunderbird had taken to hanging for several seconds at a time while I was typing, and this seemed to be becoming more frequent. Also, synchronising the calendar with my mobile was far from satisfactory.

When I recently changed my mobile for an Android model, the fact that three of my accounts were on GMail made it suddenly much more sensible to go straight to mail.google.com to see my messages, rather than downloading them to my PC's hard drive via Thunderbird. The only drawback was GMail's limited ability to create folders to put old messages in. Then a colleague explained how there was a Labs feature to allow child folders, and suddenly my last objection vanished.

(Incidentally, the feature is called 'Nested Labels'. Why is this still experimental? It's virtually a 'Make Program Usable' option, and it's standard in any mail client I've ever used.)

The fourth e-mail account is the one I have with my ISP. Nobody knows the e-mail address except them, which means all I get is the monthly 'your bill is ready' message, and the odd bit of marketing. I'll still use Thunderbird to check on those occasionally. The most recent mail from them was to tell me that they liked me so much as a customer that they'd spontaneously upped my download speed to between 8 and 24 Mbits. I checked straight away: still 6 to 7. But it's nice they're thinking of me.